Investigations

Top-level organization for sequencing projects

ACE
Active

Multi-modal investigation of the robustness of a SARS-COV-2 vaccination course with booster on immunocompromised individuals undergoing RTX and MMF tr...

Studies
1
Assays
104
PI
Jeremy Boss
Started: 2023-04-01
Ahmed.Dan.scRNA.D5_2022
Completed

Sequencing project: Ahmed.Dan.scRNA.D5_2022

Studies
1
Assays
1
PI
Rafi Ahmed
Started: 2022-11-03
Ahmed.Masao - PDL1 and IL2 combination therapy in CD8 T cells
Completed

Masao Hashimoto's project on PDL1 and IL2 mono- and combination therapies and their effects on CD8+ T cells in mice in the context of LCMV

Studies
2
Assays
2
PI
Rafi Ahmed
Started: 2022-11-05
CD43neg.SplenicBcells_2022
Completed

Sequencing project: CD43neg.SplenicBcells_2022

Studies
1
Assays
1
PI
Chris Scharer
Cameron IFNG
Active

Cameron Robinson's PhD work on Interferon gamma effects in epithelial crosstalk to lung CD8 TRM

Studies
2
Assays
2
PI
Jake Kohlmeier
Started: 2023-04-01
Day_CD4.TB_2023
On_hold

Sequencing project: Day_CD4.TB_2023

Studies
1
Assays
1
PI
Cheryl Day
F1_Hybrid_SPRET_B6
Active

Carly Roman's PhD project

Studies
1
Assays
2
PI
Chris Scharer
Female Reproductive Tract - Endometrial Remodeling
Active

Hysterectomy from 3 human donors, with samples from uterus, endocervical tissue, and ectocervical tissue. Cells sorted on bulk live leukocytes with CD...

Studies
1
Assays
2
PI
Alison Kohlmeier
Started: 2025-02-01
Human Lung CD8 TRM
Active

This investigation seeks to understand the transcriptomic and epigenetic heterogeneity of single positive (CD69+CD103-) CD8+ TRM in the human lung.

Studies
1
Assays
1
PI
Jake Kohlmeier
Started: 2020-01-01
Imprint
On_hold

This investigation seeks to understand the effects of maternal antibodies on infant responses to first encounters of influenza from transcriptomic, ep...

Studies
1
Assays
2
PI
Jake Kohlmeier
Started: 2021-04-20
Katia - COVID vaccinated SLE individuals
Completed

Single cell analysis of Spike++ B cells and B and T cell populations isolated from SARS-CoV-2 mRNA vaccinated Healthy Donors (HD) and Systemic Lupus E...

Studies
2
Assays
156
PI
Katia Faliti
Started: 2024-01-01
Keenan - B cell fate
Completed

Keenan Wiggins' PhD project on B cell fate control

Studies
2
Assays
1
PI
Chris Scharer
Kirsten - Generation of Upper Respiratory Tract TRM
Active

Kirsten Kost's PhD project investigating the generation of CD8+ TRM in the upper respiratory tract

Studies
4
Assays
7
PI
Jake Kohlmeier
Started: 2021-06-01
Kohlmeier.Ida_2021
Completed

Sequencing project: Kohlmeier.Ida_2021

Studies
1
Assays
2
PI
Jake Kohlmeier
Kohlmeier_mm10_BAL.LG.SPL_2022
Completed

Sequencing project: Kohlmeier_mm10_BAL.LG.SPL_2022

Studies
1
Assays
2
PI
Jake Kohlmeier
LEA_day14_flu_PC_sc.11.2022
Completed

Sequencing project: LEA_day14_flu_PC_sc.11.2022

Studies
1
Assays
1
PI
Jeremy Boss
LN.LG.MBC.ASC_2022
Completed

Sequencing project: LN.LG.MBC.ASC_2022

Studies
1
Assays
1
PI
Chris Scharer
LRA
Active

Lupus Research Alliance multi-omics study

Studies
1
Assays
105
PI
Jeremy Boss
Started: 2023-01-01
Lung.B.Tcell.ATAC_2021
Completed

Sequencing project: Lung.B.Tcell.ATAC_2021

Studies
1
Assays
1
PI
Chris Scharer
MAPseq Pilot
Completed
Studies
4
Assays
15
PI
Jeremy Boss
MISC
Active

Longitudinal study of Multi-system Inflammatory Syndrome in Children (MIS-C). Samples were collected from children at acute infection before IVIG or s...

Studies
2
Assays
11
PI
Jeremy Boss
Started: 2021-01-01
Roy_perturbseq
Active

Roy Mulpur's PhD project

Studies
1
Assays
1
PI
Chris Scharer
Sarah Michalets - Impact of Respiratory Tract Resident Memory CD8 T Cells on Viral Transmission
Completed

Sarah Michalet's PhD project

Studies
2
Assays
2
PI
Jake Kohlmeier
Scharer.LPS.NP-Ficoll.scRNA_2021
Completed

Sequencing project: Scharer.LPS.NP-Ficoll.scRNA_2021

Studies
1
Assays
1
PI
Chris Scharer
Shanmuganathan.Deepak_2023
Completed

Sequencing project: Shanmuganathan.Deepak_2023

Studies
1
Assays
1
PI
Shanmuganathan Chandrakasan
Singh.Monica_LEAP
Completed

Sequencing project: Singh.Monica_LEAP

Studies
1
Assays
1
PI
Ankur Singh
Singh.Monica_organoid_2023
Completed

Sequencing project: Singh.Monica_organoid_2023

Studies
1
Assays
1
PI
Ankur Singh
Tam_Run1
Active

Sequencing project: Tam_Run1

Studies
1
Assays
1
PI
Anne Davidson
Walter.MAPseq
Active

Sequencing project: Walter.MAPseq

Studies
1
Assays
1
PI
Walter_scRNA_2022
Active

Sequencing project: Walter_scRNA_2022

Studies
1
Assays
1
PI